Description

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. When reading data encoded using the `BYTE_ARRAY_STOP` method, an out-by-one error in the `cram_byte_array_stop_decode_char()` function check for a full output buffer could result in a single attacker-controlled byte being written beyond the end of a heap allocation. Exploiting this bug causes a heap buffer overflow. If a user opens a file crafted to exploit this issue, it could lead to the program crashing, or overwriting of data and heap structures in ways not expected by the program. It may be possible to use this to obtain arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.

INFO

Published Date :

2026-03-18T19:47:44.893Z

Last Modified :

2026-03-18T20:12:53.495Z

Source :

GitHub_M
AFFECTED PRODUCTS

The following products are affected by CVE-2026-31969 vulnerability.

Vendors Products
Htslib
  • Htslib
Samtools
  • Htslib
REFERENCES

Here, you will find a curated list of external links that provide in-depth information to CVE-2026-31969.

CVSS Vulnerability Scoring System

Detailed values of each vector for above chart.
Attack Vector
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Attack Requirements
Privileges Required
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VS Confidentiality
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VS Availability
SS Confidentiality
SS Integrity
SS Availability
Detailed values of each vector for above chart.
Attack Vector
Attack Complexity
Privileges Required
User Interaction
Scope
Confidentiality Impact
Integrity Impact
Availability Impact