Description

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. While most alignment records store DNA sequence and quality values, the format also allows them to omit this data in certain cases to save space. Due to some quirks of the CRAM format, it is necessary to handle these records carefully as they will actually store data that needs to be consumed and then discarded. Unfortunately the `CONST`, `XPACK` and `XRLE` encodings did not properly implement the interface needed to do this. Trying to decode records with omitted sequence or quality data using these encodings would result in an attempt to write to a NULL pointer. Exploiting this bug causes a NULL pointer dereference. Typically this will cause the program to crash. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.

INFO

Published Date :

2026-03-18T18:27:26.099Z

Last Modified :

2026-03-18T18:46:29.177Z

Source :

GitHub_M
AFFECTED PRODUCTS

The following products are affected by CVE-2026-31964 vulnerability.

Vendors Products
Htslib
  • Htslib
Samtools
  • Htslib

CVSS Vulnerability Scoring System

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